KineticState Class Reference

#include <KineticState.h>

Public Member Functions
	KineticState ()
	~KineticState ()
int	init ()
int	init (int conf_index, int from, int to)
int	get_conformation_index ()
int	get_base_bsite_type ()
int	get_target_bsite_type ()
bool	is_bound ()
void	set_sites (BindingSite *base, BindingSite *target)
BindingSite *	get_base_site ()
BindingSite *	get_target_site ()

Private Attributes
int	conformation_index
	The active conformation in this state. More...
int	base
	The active binding site type in this blob in this state. More...
int	target
	The target binding site type on any blob in this state. More...
bool	bound
	Is the base site type bound in this state? More...
BindingSite *	base_site
	Pointers to the actual binding sites (after state change has occured) More...
BindingSite *	target_site

Constructor & Destructor Documentation

KineticState()

KineticState::KineticState

(

)

~KineticState()

KineticState::~KineticState

(

)

Member Function Documentation

get_base_bsite_type()

int KineticState::get_base_bsite_type

(

)

Referenced by World::calculate_kinetic_rates().

get_base_site()

BindingSite * KineticState::get_base_site

(

)

get_conformation_index()

int KineticState::get_conformation_index

(

)

Referenced by World::change_kinetic_state().

get_target_bsite_type()

int KineticState::get_target_bsite_type

(

)

Referenced by World::calculate_kinetic_rates().

get_target_site()

BindingSite * KineticState::get_target_site

(

)

init() [1/2]

int KineticState::init

(

)

Referenced by World::load_kinetic_states().

init() [2/2]

int KineticState::init	(	int	conf_index,
		int	from,
		int	to
	)

is_bound()

bool KineticState::is_bound

(

)

set_sites()

void KineticState::set_sites	(	BindingSite *	base,
		BindingSite *	target
	)

Referenced by World::calculate_kinetic_rates().

Field Documentation

base

int KineticState::base

private

The active binding site type in this blob in this state.

Referenced by get_base_bsite_type(), init(), KineticState(), set_sites(), and ~KineticState().

base_site

BindingSite* KineticState::base_site

private

Pointers to the actual binding sites (after state change has occured)

Referenced by get_base_site(), KineticState(), set_sites(), and ~KineticState().

bound

bool KineticState::bound

private

Is the base site type bound in this state?

Referenced by init(), is_bound(), KineticState(), and ~KineticState().

conformation_index

int KineticState::conformation_index

private

The active conformation in this state.

Referenced by get_conformation_index(), init(), KineticState(), and ~KineticState().

target

int KineticState::target

private

The target binding site type on any blob in this state.

Referenced by get_target_bsite_type(), init(), KineticState(), set_sites(), and ~KineticState().

target_site

BindingSite * KineticState::target_site

private

Referenced by get_target_site(), KineticState(), set_sites(), and ~KineticState().

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The documentation for this class was generated from the following files:

• KineticState.h
• KineticState.cpp