#include <KineticState.h>
Public Member Functions | |
KineticState () | |
~KineticState () | |
int | init () |
int | init (int conf_index, int from, int to) |
int | get_conformation_index () |
int | get_base_bsite_type () |
int | get_target_bsite_type () |
bool | is_bound () |
void | set_sites (BindingSite *base, BindingSite *target) |
BindingSite * | get_base_site () |
BindingSite * | get_target_site () |
Private Attributes | |
int | conformation_index |
The active conformation in this state. More... | |
int | base |
The active binding site type in this blob in this state. More... | |
int | target |
The target binding site type on any blob in this state. More... | |
bool | bound |
Is the base site type bound in this state? More... | |
BindingSite * | base_site |
Pointers to the actual binding sites (after state change has occured) More... | |
BindingSite * | target_site |
KineticState::KineticState | ( | ) |
KineticState::~KineticState | ( | ) |
int KineticState::get_base_bsite_type | ( | ) |
Referenced by World::calculate_kinetic_rates().
BindingSite * KineticState::get_base_site | ( | ) |
int KineticState::get_conformation_index | ( | ) |
Referenced by World::change_kinetic_state().
int KineticState::get_target_bsite_type | ( | ) |
Referenced by World::calculate_kinetic_rates().
BindingSite * KineticState::get_target_site | ( | ) |
int KineticState::init | ( | ) |
Referenced by World::load_kinetic_states().
int KineticState::init | ( | int | conf_index, |
int | from, | ||
int | to | ||
) |
bool KineticState::is_bound | ( | ) |
void KineticState::set_sites | ( | BindingSite * | base, |
BindingSite * | target | ||
) |
Referenced by World::calculate_kinetic_rates().
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private |
The active binding site type in this blob in this state.
Referenced by get_base_bsite_type(), init(), KineticState(), set_sites(), and ~KineticState().
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private |
Pointers to the actual binding sites (after state change has occured)
Referenced by get_base_site(), KineticState(), set_sites(), and ~KineticState().
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private |
Is the base site type bound in this state?
Referenced by init(), is_bound(), KineticState(), and ~KineticState().
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private |
The active conformation in this state.
Referenced by get_conformation_index(), init(), KineticState(), and ~KineticState().
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private |
The target binding site type on any blob in this state.
Referenced by get_target_bsite_type(), init(), KineticState(), set_sites(), and ~KineticState().
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private |
Referenced by get_target_site(), KineticState(), set_sites(), and ~KineticState().