ffeatools.modules.FFEA_script.FFEA_script Class Reference

Public Member Functions
def	__init__ (self, fname="", fix=True)
def	remove_all_comments (self, fin)
def	remove_blob (self, index=-1)
def	add_blob (self, blob)
def	read_params_from_script_lines (self, script_lines, scriptdir)
def	read_blob_from_script_lines (self, script_lines, scriptdir, index, num_conformations)
def	read_rod_from_script_lines (self, script_lines, scriptdir, index)
def	read_springs_from_script_lines (self, script_lines, scriptdir)
def	read_ctforces_from_script_lines (self, script_lines, scriptdir)
def	default (self, basename, checkBasename=True)
def	write_to_file (self, fname, verbose=False)
def	print_details (self)
def	add_empty_blob (self)
def	reset (self)
def	load_node (self, bindex, cindex=0)
def	load_surface (self, bindex, cindex=0)
def	load_topology (self, bindex, cindex=0)
def	load_stokes (self, bindex, cindex=0)
def	load_vdw (self, bindex, cindex=0)
def	load_pin (self, bindex, cindex=0)
def	load_skeleton (self, bindex, cindex=0)
def	load_material (self, bindex, cindex=0)
def	load_trajectory (self, num_frames=100000000, start=0, frame_rate=1)
def	load_measurement (self, num_frames=100000000)
def	load_lj (self)
def	load_ctforces (self)

Data Fields
	valid
	params
	precomp
	empty
	spring
	ctforces
	blob
	rod

Constructor & Destructor Documentation

__init__()

def ffeatools.modules.FFEA_script.FFEA_script.__init__	(		self,
			fname = "",
			fix = True
	)

Member Function Documentation

add_blob()

def ffeatools.modules.FFEA_script.FFEA_script.add_blob	(		self,
			blob
	)

add_empty_blob()

def ffeatools.modules.FFEA_script.FFEA_script.add_empty_blob

(

self

)

Referenced by ffeatools.modules.FFEA_script.FFEA_script.default().

default()

def ffeatools.modules.FFEA_script.FFEA_script.default	(		self,
			basename,
			checkBasename = True
	)

load_ctforces()

def ffeatools.modules.FFEA_script.FFEA_script.load_ctforces

(

self

)

load_lj()

def ffeatools.modules.FFEA_script.FFEA_script.load_lj

(

self

)

load_material()

def ffeatools.modules.FFEA_script.FFEA_script.load_material	(		self,
			bindex,
			cindex = 0
	)

load_measurement()

def ffeatools.modules.FFEA_script.FFEA_script.load_measurement	(		self,
			num_frames = 100000000
	)

load_node()

def ffeatools.modules.FFEA_script.FFEA_script.load_node	(		self,
			bindex,
			cindex = 0
	)

load_pin()

def ffeatools.modules.FFEA_script.FFEA_script.load_pin	(		self,
			bindex,
			cindex = 0
	)

load_skeleton()

def ffeatools.modules.FFEA_script.FFEA_script.load_skeleton	(		self,
			bindex,
			cindex = 0
	)

load_stokes()

def ffeatools.modules.FFEA_script.FFEA_script.load_stokes	(		self,
			bindex,
			cindex = 0
	)

Referenced by ffeatools.modules.FFEA_stokes.FFEA_stokes.load().

load_surface()

def ffeatools.modules.FFEA_script.FFEA_script.load_surface	(		self,
			bindex,
			cindex = 0
	)

load_topology()

def ffeatools.modules.FFEA_script.FFEA_script.load_topology	(		self,
			bindex,
			cindex = 0
	)

load_trajectory()

def ffeatools.modules.FFEA_script.FFEA_script.load_trajectory	(		self,
			num_frames = 100000000,
			start = 0,
			frame_rate = 1
	)

load_vdw()

def ffeatools.modules.FFEA_script.FFEA_script.load_vdw	(		self,
			bindex,
			cindex = 0
	)

Referenced by ffeatools.modules.FFEA_vdw.FFEA_vdw.load().

print_details()

def ffeatools.modules.FFEA_script.FFEA_script.print_details

(

self

)

read_blob_from_script_lines()

def ffeatools.modules.FFEA_script.FFEA_script.read_blob_from_script_lines	(		self,
			script_lines,
			scriptdir,
			index,
			num_conformations
	)

read_ctforces_from_script_lines()

def ffeatools.modules.FFEA_script.FFEA_script.read_ctforces_from_script_lines	(		self,
			script_lines,
			scriptdir
	)

read_params_from_script_lines()

def ffeatools.modules.FFEA_script.FFEA_script.read_params_from_script_lines	(		self,
			script_lines,
			scriptdir
	)

read_rod_from_script_lines()

def ffeatools.modules.FFEA_script.FFEA_script.read_rod_from_script_lines	(		self,
			script_lines,
			scriptdir,
			index
	)

read_springs_from_script_lines()

def ffeatools.modules.FFEA_script.FFEA_script.read_springs_from_script_lines	(		self,
			script_lines,
			scriptdir
	)

remove_all_comments()

def ffeatools.modules.FFEA_script.FFEA_script.remove_all_comments	(		self,
			fin
	)

remove_blob()

def ffeatools.modules.FFEA_script.FFEA_script.remove_blob	(		self,
			index = -1
	)

reset()

def ffeatools.modules.FFEA_script.FFEA_script.reset

(

self

)

Referenced by ffeatools.modules.FFEA_skeleton.FFEA_skeleton.__init__(), ffeatools.modules.FFEA_vdw.FFEA_vdw.__init__(), ffeatools.modules.FFEA_springs.FFEA_springs.__init__(), ffeatools.modules.FFEA_stokes.FFEA_stokes.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.__init__(), ffeatools.modules.FFEA_topology.FFEA_topology.__init__(), ffeatools.modules.FFEA_script.FFEA_script.__init__(), ffeatools.modules.FFEA_surface.FFEA_surface.__init__(), ffeatools.modules.FFEA_springs.FFEA_spring.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_traj_blob.__init__(), ffeatools.modules.FFEA_surface.FFEA_face.__init__(), ffeatools.modules.FFEA_topology.FFEA_element.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.build_from_pdb(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_surface.FFEA_surface.load_face(), and ffeatools.modules.FFEA_surface.FFEA_surface.load_vol().

write_to_file()

def ffeatools.modules.FFEA_script.FFEA_script.write_to_file	(		self,
			fname,
			verbose = False
	)

Field Documentation

blob

ffeatools.modules.FFEA_script.FFEA_script.blob

Referenced by ffeatools.modules.FFEA_script.FFEA_script.add_blob(), ffeatools.modules.FFEA_script.FFEA_script.add_empty_blob(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.build_from_pdb(), ffeatools.modules.FFEA_script.FFEA_script.default(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.delete_frame(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load_frame(), ffeatools.modules.FFEA_script.FFEA_script.load_material(), ffeatools.modules.FFEA_script.FFEA_script.load_node(), ffeatools.modules.FFEA_script.FFEA_script.load_pin(), ffeatools.modules.FFEA_script.FFEA_script.load_skeleton(), ffeatools.modules.FFEA_script.FFEA_script.load_stokes(), ffeatools.modules.FFEA_script.FFEA_script.load_surface(), ffeatools.modules.FFEA_script.FFEA_script.load_topology(), ffeatools.modules.FFEA_script.FFEA_script.load_vdw(), ffeatools.modules.FFEA_script.FFEA_script.print_details(), ffeatools.modules.FFEA_script.FFEA_script.remove_blob(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.rescale(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_header(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_single_blob(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_single_frame(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.translate(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.write_frame_to_file(), and ffeatools.modules.FFEA_script.FFEA_script.write_to_file().

ctforces

ffeatools.modules.FFEA_script.FFEA_script.ctforces

Referenced by ffeatools.modules.FFEA_script.FFEA_script.load_ctforces(), and ffeatools.modules.FFEA_script.FFEA_script.write_to_file().

empty

ffeatools.modules.FFEA_script.FFEA_script.empty

Referenced by ffeatools.modules.FFEA_skeleton.FFEA_skeleton.reset(), ffeatools.modules.FFEA_vdw.FFEA_vdw.reset(), ffeatools.modules.FFEA_stokes.FFEA_stokes.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), and ffeatools.modules.FFEA_script.FFEA_script.reset().

params

ffeatools.modules.FFEA_script.FFEA_script.params

Referenced by ffeatools.modules.FFEA_script.FFEA_script.add_blob(), ffeatools.modules.FFEA_script.FFEA_script.add_empty_blob(), ffeatools.modules.FFEA_script.FFEA_script.default(), ffeatools.modules.FFEA_script.FFEA_script.load_lj(), ffeatools.modules.FFEA_script.FFEA_script.load_measurement(), ffeatools.modules.FFEA_script.FFEA_script.load_trajectory(), ffeatools.modules.FFEA_script.FFEA_script.print_details(), ffeatools.modules.FFEA_script.FFEA_script.remove_blob(), ffeatools.modules.FFEA_script.FFEA_script.reset(), and ffeatools.modules.FFEA_script.FFEA_script.write_to_file().

precomp

ffeatools.modules.FFEA_script.FFEA_script.precomp

Referenced by ffeatools.modules.FFEA_script.FFEA_script.write_to_file().

rod

ffeatools.modules.FFEA_script.FFEA_script.rod

spring

ffeatools.modules.FFEA_script.FFEA_script.spring

Referenced by ffeatools.modules.FFEA_springs.FFEA_springs.add_spring(), ffeatools.modules.FFEA_springs.FFEA_springs.print_details(), ffeatools.modules.FFEA_springs.FFEA_springs.write_to_file(), and ffeatools.modules.FFEA_script.FFEA_script.write_to_file().

valid

ffeatools.modules.FFEA_script.FFEA_script.valid

Referenced by ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.load(), ffeatools.modules.FFEA_vdw.FFEA_vdw.load(), ffeatools.modules.FFEA_stokes.FFEA_stokes.load(), ffeatools.modules.FFEA_topology.FFEA_topology.load(), ffeatools.modules.FFEA_surface.FFEA_surface.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.reset(), ffeatools.modules.FFEA_vdw.FFEA_vdw.reset(), ffeatools.modules.FFEA_stokes.FFEA_stokes.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), and ffeatools.modules.FFEA_script.FFEA_script.reset().

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The documentation for this class was generated from the following file:

• FFEA_script.py