ffeatools.modules.FFEA_measurement.FFEA_measurement Class Reference

Public Member Functions
def	__init__ (self, fname="", frame_rate=1, num_frames_to_read=1000000)
def	load_global (self, fname, frame_rate=1, num_frames_to_read=1000000)
def	load_detailed (self, fname, frame_rate=1, num_frames_to_read=1000000)
def	add_empty_blob (self)
def	write_to_file (self, fname, script=None)
def	reset (self)

Data Fields
	valid
	num_frames
	empty
	num_blobs
	global_meas
	blob_meas
	interblob_meas
	detail_string
	param_string

Constructor & Destructor Documentation

__init__()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.__init__	(		self,
			fname = "",
			frame_rate = 1,
			num_frames_to_read = 1000000
	)

Member Function Documentation

add_empty_blob()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.add_empty_blob

(

self

)

Referenced by ffeatools.modules.FFEA_script.FFEA_script.default().

load_detailed()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.load_detailed	(		self,
			fname,
			frame_rate = 1,
			num_frames_to_read = 1000000
	)

load_global()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.load_global	(		self,
			fname,
			frame_rate = 1,
			num_frames_to_read = 1000000
	)

reset()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.reset

(

self

)

Referenced by ffeatools.modules.FFEA_skeleton.FFEA_skeleton.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.__init__(), ffeatools.modules.FFEA_springs.FFEA_springs.__init__(), ffeatools.modules.FFEA_vdw.FFEA_vdw.__init__(), ffeatools.modules.FFEA_node.FFEA_node.__init__(), ffeatools.modules.FFEA_stokes.FFEA_stokes.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.__init__(), ffeatools.modules.FFEA_pin.FFEA_pin.__init__(), ffeatools.modules.FFEA_topology.FFEA_topology.__init__(), ffeatools.modules.FFEA_pdb.FFEA_pdb.__init__(), ffeatools.modules.FFEA_measurement.FFEA_measurement.__init__(), ffeatools.modules.FFEA_script.FFEA_script.__init__(), ffeatools.modules.FFEA_surface.FFEA_surface.__init__(), ffeatools.modules.FFEA_springs.FFEA_spring.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb_blob.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_traj_blob.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb_frame.__init__(), ffeatools.modules.FFEA_pdb.FFEA_pdb_atom.__init__(), ffeatools.modules.FFEA_surface.FFEA_face.__init__(), ffeatools.modules.FFEA_topology.FFEA_element.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.build_from_pdb(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_measurement.FFEA_measurement.load_detailed(), ffeatools.modules.FFEA_surface.FFEA_surface.load_face(), ffeatools.modules.FFEA_measurement.FFEA_measurement.load_global(), ffeatools.modules.FFEA_node.FFEA_node.load_vol(), ffeatools.modules.FFEA_surface.FFEA_surface.load_vol(), and ffeatools.modules.FFEA_pin.FFEA_pin.pin_radially().

write_to_file()

def ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file	(		self,
			fname,
			script = None
	)

Field Documentation

blob_meas

ffeatools.modules.FFEA_measurement.FFEA_measurement.blob_meas

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.add_empty_blob(), and ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file().

detail_string

ffeatools.modules.FFEA_measurement.FFEA_measurement.detail_string

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.load_global(), and ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file().

empty

ffeatools.modules.FFEA_measurement.FFEA_measurement.empty

Referenced by ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.reset(), ffeatools.modules.FFEA_vdw.FFEA_vdw.reset(), ffeatools.modules.FFEA_stokes.FFEA_stokes.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_measurement.FFEA_measurement.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb.reset(), ffeatools.modules.FFEA_script.FFEA_script.reset(), and ffeatools.modules.FFEA_node.FFEA_node.reset().

global_meas

ffeatools.modules.FFEA_measurement.FFEA_measurement.global_meas

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.add_empty_blob(), and ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file().

interblob_meas

ffeatools.modules.FFEA_measurement.FFEA_measurement.interblob_meas

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.add_empty_blob(), and ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file().

num_blobs

ffeatools.modules.FFEA_measurement.FFEA_measurement.num_blobs

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.add_empty_blob(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.add_empty_blob(), ffeatools.modules.FFEA_script.FFEA_script_params.assign_param(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.delete_frame(), ffeatools.modules.FFEA_script.FFEA_script_params.fix_params(), ffeatools.modules.FFEA_measurement.FFEA_measurement.load_detailed(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.rescale(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_header(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_single_blob(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_single_frame(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.translate(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.write_header_to_file(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.write_to_file(), ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file(), and ffeatools.modules.FFEA_script.FFEA_script_params.write_to_file().

num_frames

ffeatools.modules.FFEA_measurement.FFEA_measurement.num_frames

Referenced by ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.add_empty_frame(), ffeatools.modules.FFEA_pdb.FFEA_pdb.add_empty_frame(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb_blob.add_empty_frame(), ffeatools.modules.FFEA_pdb.FFEA_pdb_chain.add_empty_frame(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.add_frames(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_pdb.FFEA_pdb.clear_position_data(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.delete_frame(), ffeatools.modules.FFEA_rod.FFEA_rod.get_p_i(), ffeatools.modules.FFEA_rod.FFEA_rod.get_trajectory_length(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load_frame(), ffeatools.modules.FFEA_rod.FFEA_rod.load_trajectory(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb_chain.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb.rotate_chains_individually(), ffeatools.modules.FFEA_pdb.FFEA_pdb.rotate_full_system(), ffeatools.modules.FFEA_pdb.FFEA_pdb.set_pos(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.set_single_frame(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.translate(), ffeatools.modules.FFEA_pdb.FFEA_pdb.translate(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.write_frame_to_file(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.write_to_file(), ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.write_to_file(), and ffeatools.modules.FFEA_pdb.FFEA_pdb.write_to_text().

param_string

ffeatools.modules.FFEA_measurement.FFEA_measurement.param_string

Referenced by ffeatools.modules.FFEA_measurement.FFEA_measurement.write_to_file().

valid

ffeatools.modules.FFEA_measurement.FFEA_measurement.valid

Referenced by ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.load(), ffeatools.modules.FFEA_vdw.FFEA_vdw.load(), ffeatools.modules.FFEA_pin.FFEA_pin.load(), ffeatools.modules.FFEA_pdb.FFEA_pdb.load(), ffeatools.modules.FFEA_stokes.FFEA_stokes.load(), ffeatools.modules.FFEA_topology.FFEA_topology.load(), ffeatools.modules.FFEA_node.FFEA_node.load(), ffeatools.modules.FFEA_surface.FFEA_surface.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.reset(), ffeatools.modules.FFEA_vdw.FFEA_vdw.reset(), ffeatools.modules.FFEA_stokes.FFEA_stokes.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_measurement.FFEA_measurement.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb.reset(), ffeatools.modules.FFEA_script.FFEA_script.reset(), and ffeatools.modules.FFEA_node.FFEA_node.reset().

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The documentation for this class was generated from the following file:

• FFEA_measurement.py