FFEA Tools

Fluctuating Finite Element Analysis

Public Member Functions
def	__init__ (self, fname)

def	load (self, fname)

def	load_bsites (self, fname)

def	add_bsite (self, s)

def	print_details (self)

def	reset (self)

Data Fields
	valid

	bsite

	num_binding_sites

Constructor & Destructor Documentation

◆ init()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.__init__	(		self,
			fname
	)

Member Function Documentation

◆ add_bsite()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.add_bsite	(		self,
			s
	)

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.load_bsites().

◆ load()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.load	(		self,
			fname
	)

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.__init__(), ffeatools.modules.FFEA_springs.FFEA_springs.__init__(), ffeatools.modules.FFEA_kinetic_states.FFEA_kinetic_states.__init__(), and ffeatools.modules.FFEA_kinetic_rates.FFEA_kinetic_rates.__init__().

◆ load_bsites()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.load_bsites	(		self,
			fname
	)

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.load().

◆ print_details()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.print_details ( self )

◆ reset()

def ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.reset ( self )

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.__init__(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.__init__(), ffeatools.modules.FFEA_lj.FFEA_lj.__init__(), ffeatools.modules.FFEA_kinetic_rates.FFEA_kinetic_rates.__init__(), ffeatools.modules.FFEA_springs.FFEA_springs.__init__(), ffeatools.modules.FFEA_kinetic_states.FFEA_kinetic_states.__init__(), ffeatools.modules.FFEA_vdw.FFEA_vdw.__init__(), ffeatools.modules.FFEA_kinetic_map.FFEA_kinetic_map.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.__init__(), ffeatools.modules.FFEA_stokes.FFEA_stokes.__init__(), ffeatools.modules.FFEA_node.FFEA_node.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.__init__(), ffeatools.modules.FFEA_ctforces.FFEA_ctforce_linear.__init__(), ffeatools.modules.FFEA_pin.FFEA_pin.__init__(), ffeatools.modules.FFEA_topology.FFEA_topology.__init__(), ffeatools.modules.FFEA_pdb.FFEA_pdb.__init__(), ffeatools.modules.FFEA_material.FFEA_material.__init__(), ffeatools.modules.FFEA_measurement.FFEA_measurement.__init__(), ffeatools.modules.FFEA_script.FFEA_script.__init__(), ffeatools.modules.FFEA_surface.FFEA_surface.__init__(), ffeatools.modules.FFEA_ctforces.FFEA_ctforce_rotational.__init__(), ffeatools.modules.FFEA_ctforces.FFEA_ctforce_linear_surface.__init__(), ffeatools.modules.FFEA_ctforces.FFEA_ctforces.__init__(), ffeatools.modules.FFEA_kinetic_states.FFEA_kinetic_state.__init__(), ffeatools.modules.FFEA_springs.FFEA_spring.__init__(), ffeatools.modules.FFEA_lj.FFEA_lj_pair.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb_blob.__init__(), ffeatools.modules.FFEA_trajectory.FFEA_traj_blob.__init__(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb_frame.__init__(), ffeatools.modules.FFEA_pdb.FFEA_pdb_atom.__init__(), ffeatools.modules.FFEA_surface.FFEA_face.__init__(), ffeatools.modules.FFEA_topology.FFEA_element.__init__(), ffeatools.modules.FFEA_material.FFEA_material.build(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.build_from_pdb(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb_OLD.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.load_bsites(), ffeatools.modules.FFEA_measurement.FFEA_measurement.load_detailed(), ffeatools.modules.FFEA_surface.FFEA_surface.load_face(), ffeatools.modules.FFEA_measurement.FFEA_measurement.load_global(), ffeatools.modules.FFEA_kinetic_rates.FFEA_kinetic_rates.load_rates(), ffeatools.modules.FFEA_kinetic_states.FFEA_kinetic_states.load_states(), ffeatools.modules.FFEA_node.FFEA_node.load_vol(), ffeatools.modules.FFEA_surface.FFEA_surface.load_vol(), and ffeatools.modules.FFEA_pin.FFEA_pin.pin_radially().

Field Documentation

◆ bsite

ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.bsite

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.add_bsite(), and ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.print_details().

◆ num_binding_sites

ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.num_binding_sites

Referenced by ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.add_bsite(), and ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.print_details().

◆ valid

ffeatools.modules.FFEA_binding_sites.FFEA_binding_sites.valid

Referenced by ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_rod(), ffeatools.modules.FFEA_pdb.FFEA_pdb.build_from_traj(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.load(), ffeatools.modules.FFEA_lj.FFEA_lj.load(), ffeatools.modules.FFEA_vdw.FFEA_vdw.load(), ffeatools.modules.FFEA_stokes.FFEA_stokes.load(), ffeatools.modules.FFEA_topology.FFEA_topology.load(), ffeatools.modules.FFEA_pdb.FFEA_pdb.load(), ffeatools.modules.FFEA_pin.FFEA_pin.load(), ffeatools.modules.FFEA_material.FFEA_material.load(), ffeatools.modules.FFEA_node.FFEA_node.load(), ffeatools.modules.FFEA_surface.FFEA_surface.load(), ffeatools.modules.FFEA_ctforces.FFEA_ctforces.load(), ffeatools.modules.FFEA_skeleton.FFEA_skeleton.reset(), ffeatools.modules.FFEA_lj.FFEA_lj.reset(), ffeatools.modules.FFEA_vdw.FFEA_vdw.reset(), ffeatools.modules.FFEA_stokes.FFEA_stokes.reset(), ffeatools.modules.FFEA_trajectory.FFEA_trajectory.reset(), ffeatools.modules.FFEA_ctforces.FFEA_ctforces.reset(), ffeatools.modules.FFEA_measurement.FFEA_measurement.reset(), ffeatools.modules.FFEA_pdb.FFEA_pdb.reset(), ffeatools.modules.FFEA_script.FFEA_script.reset(), and ffeatools.modules.FFEA_node.FFEA_node.reset().

The documentation for this class was generated from the following file:

FFEA_binding_sites.py